Index A | B | C | D | E | F | G | I | J | L | M | N | O | P | Q | R | S | T | U | W A abnumber() (openprotein.align.AlignAPI method) abnumber_file() (openprotein.align.AlignAPI method) af2 (openprotein.fold.FoldAPI attribute) affinity (openprotein.fold.FoldComplexResultFuture property) algorithm (openprotein.design.DesignFuture property) align (openprotein.OpenProtein property) AlignAPI (class in openprotein.align) allowed_tokens (openprotein.design.DesignFuture property) alphafold2 (openprotein.fold.FoldAPI attribute) AlphaFold2Model (class in openprotein.fold) assay (openprotein.design.DesignFuture property) AssayDataset (class in openprotein.data) AssayMetadata (class in openprotein.data) atom1 (openprotein.models.foundation.boltzgen_schema.BondConstraint attribute) atom2 (openprotein.models.foundation.boltzgen_schema.BondConstraint attribute) attn() (openprotein.embeddings.ESMModel method) (openprotein.embeddings.OpenProteinModel method) B binding_types (openprotein.models.foundation.boltzgen_schema.FileEntity attribute) (openprotein.models.foundation.boltzgen_schema.LigandEntity attribute) (openprotein.models.foundation.boltzgen_schema.ProteinEntity attribute) boltz1 (openprotein.fold.FoldAPI attribute) Boltz1Model (class in openprotein.fold) boltz1x (openprotein.fold.FoldAPI attribute) Boltz1xModel (class in openprotein.fold) boltz2 (openprotein.fold.FoldAPI attribute) Boltz2Model (class in openprotein.fold) boltz_1 (openprotein.fold.FoldAPI attribute) boltz_1x (openprotein.fold.FoldAPI attribute) boltz_2 (openprotein.fold.FoldAPI attribute) BoltzGenDesignSpec (class in openprotein.models.foundation.boltzgen_schema) BoltzGenFuture (class in openprotein.models.foundation.boltzgen) BoltzGenModel (class in openprotein.models.foundation.boltzgen) bond (openprotein.models.foundation.boltzgen_schema.Constraint attribute) BondConstraint (class in openprotein.models.foundation.boltzgen_schema) C cancelled() (openprotein.embeddings.EmbeddingsGenerateFuture method) (openprotein.embeddings.EmbeddingsResultFuture method) (openprotein.embeddings.EmbeddingsScoreFuture method) (openprotein.fold.FoldComplexResultFuture method) (openprotein.fold.FoldResultFuture method) (openprotein.models.foundation.boltzgen.BoltzGenFuture method) (openprotein.models.foundation.rfdiffusion.RFdiffusionFuture method) (openprotein.prompt.Prompt method) (openprotein.svd.SVDEmbeddingsResultFuture method) (openprotein.umap.UMAPEmbeddingsResultFuture method) ccd (openprotein.models.foundation.boltzgen_schema.LigandEntity attribute) check_at_least_one_constraint() (openprotein.models.foundation.boltzgen_schema.Constraint method) check_ccd_or_smiles() (openprotein.models.foundation.boltzgen_schema.LigandEntity method) check_entities_not_empty() (openprotein.models.foundation.boltzgen_schema.BoltzGenDesignSpec class method) check_exactly_one_entity() (openprotein.models.foundation.boltzgen_schema.Entity method) clustalo() (openprotein.align.AlignAPI method) clustalo_file() (openprotein.align.AlignAPI method) confidence (openprotein.fold.FoldComplexResultFuture property) Constraint (class in openprotein.models.foundation.boltzgen_schema) constraints (openprotein.models.foundation.boltzgen_schema.BoltzGenDesignSpec attribute) create() (openprotein.data.DataAPI method) (openprotein.embeddings.ESMModel class method) (openprotein.embeddings.OpenProteinModel class method) (openprotein.embeddings.PoET2Model class method) (openprotein.embeddings.PoETModel class method) (openprotein.fold.FoldResultFuture class method) create_genetic_algorithm_design() (openprotein.design.DesignAPI method) create_msa() (openprotein.align.AlignAPI method) create_prompt() (openprotein.prompt.PromptAPI method) create_query() (openprotein.prompt.PromptAPI method) created_date (openprotein.embeddings.EmbeddingsGenerateFuture property) (openprotein.embeddings.EmbeddingsResultFuture property) (openprotein.embeddings.EmbeddingsScoreFuture property) (openprotein.fold.FoldComplexResultFuture property) (openprotein.fold.FoldResultFuture property) (openprotein.models.foundation.boltzgen.BoltzGenFuture property) (openprotein.models.foundation.rfdiffusion.RFdiffusionFuture property) (openprotein.prompt.Prompt property) (openprotein.svd.SVDEmbeddingsResultFuture property) (openprotein.umap.UMAPEmbeddingsResultFuture property) criteria (openprotein.design.DesignFuture property) crossover_prob (openprotein.design.DesignFuture property) crossover_prob_pointwise (openprotein.design.DesignFuture property) crossvalidate() (openprotein.predictor.PredictorModel method) cyclic (openprotein.models.foundation.boltzgen_schema.ProteinEntity attribute) D data (openprotein.OpenProtein property) DataAPI (class in openprotein.data) delete() (openprotein.predictor.PredictorModel method) (openprotein.svd.SVDModel method) (openprotein.umap.UMAPModel method) delete_predictor() (openprotein.predictor.PredictorAPI method) design (openprotein.models.foundation.boltzgen_schema.FileEntity attribute) (openprotein.OpenProtein property) design_insertions (openprotein.models.foundation.boltzgen_schema.FileEntity attribute) DesignAPI (class in openprotein.design) DesignFuture (class in openprotein.design) dnas (openprotein.fold.FoldComplexResultFuture property) done() (openprotein.embeddings.EmbeddingsGenerateFuture method) (openprotein.embeddings.EmbeddingsResultFuture method) (openprotein.embeddings.EmbeddingsScoreFuture method) (openprotein.fold.FoldComplexResultFuture method) (openprotein.fold.FoldResultFuture method) (openprotein.models.foundation.boltzgen.BoltzGenFuture method) (openprotein.models.foundation.rfdiffusion.RFdiffusionFuture method) (openprotein.prompt.Prompt method) (openprotein.svd.SVDEmbeddingsResultFuture method) (openprotein.umap.UMAPEmbeddingsResultFuture method) E embed() (openprotein.embeddings.ESMModel method) (openprotein.embeddings.OpenProteinModel method) (openprotein.embeddings.PoET2Model method) (openprotein.embeddings.PoETModel method) (openprotein.svd.SVDModel method) (openprotein.umap.UMAPModel method) embedding (openprotein.OpenProtein property) EmbeddingModel (class in openprotein.embeddings) embeddings (openprotein.OpenProtein property) (openprotein.umap.UMAPModel property) EmbeddingsAPI (class in openprotein.embeddings) EmbeddingsGenerateFuture (class in openprotein.embeddings) EmbeddingsResultFuture (class in openprotein.embeddings) EmbeddingsScoreFuture (class in openprotein.embeddings) end_date (openprotein.embeddings.EmbeddingsGenerateFuture property) (openprotein.embeddings.EmbeddingsResultFuture property) (openprotein.embeddings.EmbeddingsScoreFuture property) (openprotein.fold.FoldComplexResultFuture property) (openprotein.fold.FoldResultFuture property) (openprotein.models.foundation.boltzgen.BoltzGenFuture property) (openprotein.models.foundation.rfdiffusion.RFdiffusionFuture property) (openprotein.prompt.Prompt property) (openprotein.svd.SVDEmbeddingsResultFuture property) (openprotein.umap.UMAPEmbeddingsResultFuture property) ensemble() (openprotein.predictor.PredictorAPI method) entities (openprotein.models.foundation.boltzgen_schema.BoltzGenDesignSpec attribute) Entity (class in openprotein.models.foundation.boltzgen_schema) esm1b (openprotein.embeddings.EmbeddingsAPI attribute) esm1v (openprotein.embeddings.EmbeddingsAPI attribute) esm2 (openprotein.embeddings.EmbeddingsAPI attribute) esmfold (openprotein.fold.FoldAPI attribute) ESMFoldModel (class in openprotein.fold) ESMModel (class in openprotein.embeddings) exclude (openprotein.models.foundation.boltzgen_schema.FileEntity attribute) F file (openprotein.models.foundation.boltzgen_schema.Entity attribute) FileEntity (class in openprotein.models.foundation.boltzgen_schema) fit_gp() (openprotein.embeddings.ESMModel method) (openprotein.embeddings.OpenProteinModel method) (openprotein.embeddings.PoET2Model method) (openprotein.embeddings.PoETModel method) (openprotein.predictor.PredictorAPI method) (openprotein.svd.SVDModel method) fit_svd() (openprotein.embeddings.ESMModel method) (openprotein.embeddings.OpenProteinModel method) (openprotein.embeddings.PoET2Model method) (openprotein.embeddings.PoETModel method) (openprotein.svd.SVDAPI method) fit_umap() (openprotein.embeddings.ESMModel method) (openprotein.embeddings.OpenProteinModel method) (openprotein.embeddings.PoET2Model method) (openprotein.embeddings.PoETModel method) (openprotein.svd.SVDModel method) (openprotein.umap.UMAPAPI method) fold (openprotein.OpenProtein property) fold() (openprotein.fold.AlphaFold2Model method) (openprotein.fold.Boltz1Model method) (openprotein.fold.Boltz1xModel method) (openprotein.fold.Boltz2Model method) (openprotein.fold.ESMFoldModel method) FoldAPI (class in openprotein.fold) FoldComplexResultFuture (class in openprotein.fold) FoldResultFuture (class in openprotein.fold) fuse (openprotein.models.foundation.boltzgen_schema.FileEntity attribute) Future (class in openprotein.jobs) G generate() (openprotein.embeddings.PoET2Model method) (openprotein.embeddings.PoETModel method) (openprotein.models.foundation.boltzgen.BoltzGenModel method) (openprotein.models.foundation.rfdiffusion.RFdiffusionModel method) get() (openprotein.align.MSAFuture method) (openprotein.data.DataAPI method) (openprotein.design.DesignFuture method) (openprotein.embeddings.EmbeddingsGenerateFuture method) (openprotein.embeddings.EmbeddingsResultFuture method) (openprotein.embeddings.EmbeddingsScoreFuture method) (openprotein.fold.FoldComplexResultFuture method) (openprotein.fold.FoldResultFuture method) (openprotein.jobs.Future method) (openprotein.jobs.JobsAPI method) (openprotein.models.foundation.boltzgen.BoltzGenFuture method) (openprotein.models.foundation.rfdiffusion.RFdiffusionFuture method) (openprotein.predictor.PredictorModel method) (openprotein.prompt.Prompt method) (openprotein.svd.SVDEmbeddingsResultFuture method) (openprotein.svd.SVDModel method) (openprotein.umap.UMAPEmbeddingsResultFuture method) (openprotein.umap.UMAPModel method) get_assay() (openprotein.design.DesignFuture method) (openprotein.predictor.PredictorModel method) get_design() (openprotein.design.DesignAPI method) get_first() (openprotein.data.AssayDataset method) get_inputs() (openprotein.svd.SVDModel method) (openprotein.umap.UMAPModel method) get_item() (openprotein.embeddings.EmbeddingsResultFuture method) (openprotein.fold.FoldResultFuture method) (openprotein.svd.SVDEmbeddingsResultFuture method) (openprotein.umap.UMAPEmbeddingsResultFuture method) get_metadata() (openprotein.embeddings.ESMModel method) (openprotein.embeddings.OpenProteinModel method) (openprotein.embeddings.PoET2Model method) (openprotein.embeddings.PoETModel method) (openprotein.models.foundation.boltzgen.BoltzGenModel method) (openprotein.models.foundation.rfdiffusion.RFdiffusionModel method) get_model() (openprotein.embeddings.EmbeddingsAPI method) (openprotein.embeddings.ESMModel class method) (openprotein.embeddings.OpenProteinModel class method) (openprotein.embeddings.PoET2Model class method) (openprotein.embeddings.PoETModel class method) (openprotein.fold.FoldAPI method) (openprotein.predictor.PredictorModel method) get_msa() (openprotein.align.AlignAPI method) get_pdb() (openprotein.models.foundation.boltzgen.BoltzGenFuture method) (openprotein.models.foundation.rfdiffusion.RFdiffusionFuture method) get_predictor() (openprotein.predictor.PredictorAPI method) get_prompt() (openprotein.align.AlignAPI method) (openprotein.prompt.PromptAPI method) get_query() (openprotein.prompt.PromptAPI method) get_results() (openprotein.fold.FoldAPI method) get_seed() (openprotein.align.AlignAPI method) get_slice() (openprotein.data.AssayDataset method) get_svd() (openprotein.svd.SVDAPI method) get_umap() (openprotein.umap.UMAPAPI method) I id (openprotein.design.DesignFuture property) (openprotein.embeddings.EmbeddingsGenerateFuture property) (openprotein.embeddings.EmbeddingsResultFuture property) (openprotein.embeddings.EmbeddingsScoreFuture property) (openprotein.fold.FoldComplexResultFuture property) (openprotein.fold.FoldResultFuture property) (openprotein.models.foundation.boltzgen.BoltzGenFuture property) (openprotein.models.foundation.boltzgen_schema.LigandEntity attribute) (openprotein.models.foundation.boltzgen_schema.ProteinEntity attribute) (openprotein.models.foundation.rfdiffusion.RFdiffusionFuture property) (openprotein.predictor.PredictorModel property) (openprotein.prompt.Prompt property) (openprotein.svd.SVDEmbeddingsResultFuture property) (openprotein.svd.SVDModel property) (openprotein.umap.UMAPEmbeddingsResultFuture property) (openprotein.umap.UMAPModel property) include (openprotein.models.foundation.boltzgen_schema.FileEntity attribute) include_proximity (openprotein.models.foundation.boltzgen_schema.FileEntity attribute) indel() (openprotein.embeddings.PoET2Model method) (openprotein.embeddings.PoETModel method) J Job (class in openprotein.jobs) job (openprotein.fold.FoldComplexResultFuture attribute) (openprotein.fold.FoldResultFuture attribute) job_id (openprotein.embeddings.EmbeddingsGenerateFuture property) (openprotein.embeddings.EmbeddingsResultFuture property) (openprotein.embeddings.EmbeddingsScoreFuture property) (openprotein.fold.FoldComplexResultFuture property) (openprotein.fold.FoldResultFuture property) (openprotein.models.foundation.boltzgen.BoltzGenFuture property) (openprotein.models.foundation.rfdiffusion.RFdiffusionFuture property) (openprotein.prompt.Prompt property) (openprotein.svd.SVDEmbeddingsResultFuture property) (openprotein.umap.UMAPEmbeddingsResultFuture property) job_type (openprotein.embeddings.EmbeddingsGenerateFuture property) (openprotein.embeddings.EmbeddingsResultFuture property) (openprotein.embeddings.EmbeddingsScoreFuture property) (openprotein.fold.FoldComplexResultFuture property) (openprotein.fold.FoldResultFuture property) (openprotein.models.foundation.boltzgen.BoltzGenFuture property) (openprotein.models.foundation.rfdiffusion.RFdiffusionFuture property) (openprotein.prompt.Prompt property) (openprotein.svd.SVDEmbeddingsResultFuture property) (openprotein.umap.UMAPEmbeddingsResultFuture property) jobs (openprotein.OpenProtein property) JobsAPI (class in openprotein.jobs) L ligand (openprotein.models.foundation.boltzgen_schema.Entity attribute) LigandEntity (class in openprotein.models.foundation.boltzgen_schema) ligands (openprotein.fold.FoldComplexResultFuture property) list() (openprotein.data.DataAPI method) (openprotein.jobs.JobsAPI method) list_designs() (openprotein.design.DesignAPI method) list_models() (openprotein.data.AssayDataset method) (openprotein.embeddings.EmbeddingsAPI method) (openprotein.fold.FoldAPI method) list_predictors() (openprotein.predictor.PredictorAPI method) list_prompts() (openprotein.prompt.PromptAPI method) list_svd() (openprotein.svd.SVDAPI method) list_umap() (openprotein.umap.UMAPAPI method) logits() (openprotein.embeddings.ESMModel method) (openprotein.embeddings.OpenProteinModel method) (openprotein.embeddings.PoET2Model method) (openprotein.embeddings.PoETModel method) M mafft() (openprotein.align.AlignAPI method) mafft_file() (openprotein.align.AlignAPI method) max (openprotein.models.foundation.boltzgen_schema.TotalLengthConstraint attribute) metadata (openprotein.design.DesignFuture property) (openprotein.embeddings.ESMModel property) (openprotein.embeddings.OpenProteinModel property) (openprotein.embeddings.PoET2Model property) (openprotein.embeddings.PoETModel property) (openprotein.fold.FoldComplexResultFuture property) (openprotein.fold.FoldResultFuture property) (openprotein.predictor.PredictorModel property) (openprotein.svd.SVDModel property) (openprotein.umap.UMAPModel property) metrics (openprotein.fold.FoldComplexResultFuture property) min (openprotein.models.foundation.boltzgen_schema.TotalLengthConstraint attribute) min_dist (openprotein.umap.UMAPModel property) minifold (openprotein.fold.FoldAPI attribute) model (openprotein.predictor.PredictorModel property) (openprotein.svd.SVDModel property) (openprotein.umap.UMAPModel property) model_id (openprotein.fold.ESMFoldModel attribute) (openprotein.fold.FoldComplexResultFuture property) (openprotein.fold.FoldResultFuture property) models (openprotein.OpenProtein property) ModelsAPI (class in openprotein.models) msa_id (openprotein.prompt.PromptJob property) MSAFuture (class in openprotein.align) mutation_average_mutations_per_seq (openprotein.design.DesignFuture property) N n_components (openprotein.svd.SVDModel property) (openprotein.umap.UMAPModel property) n_neighbors (openprotein.umap.UMAPModel property) n_offsprings (openprotein.design.DesignFuture property) num_rows (openprotein.design.DesignFuture property) num_steps (openprotein.design.DesignFuture property) O OpenProtein (class in openprotein) OpenProteinModel (class in openprotein.embeddings) P pae (openprotein.fold.FoldComplexResultFuture property) path (openprotein.models.foundation.boltzgen_schema.FileEntity attribute) pde (openprotein.fold.FoldComplexResultFuture property) plddt (openprotein.fold.FoldComplexResultFuture property) poet (openprotein.embeddings.EmbeddingsAPI attribute) poet2 (openprotein.embeddings.EmbeddingsAPI attribute) PoET2Model (class in openprotein.embeddings) PoETModel (class in openprotein.embeddings) pop_size (openprotein.design.DesignFuture property) predict() (openprotein.models.foundation.boltzgen.BoltzGenModel method) (openprotein.models.foundation.rfdiffusion.RFdiffusionModel method) (openprotein.predictor.PredictorModel method) predictor (openprotein.OpenProtein property) PredictorAPI (class in openprotein.predictor) PredictorModel (class in openprotein.predictor) progress_counter (openprotein.embeddings.EmbeddingsGenerateFuture property) (openprotein.embeddings.EmbeddingsResultFuture property) (openprotein.embeddings.EmbeddingsScoreFuture property) (openprotein.fold.FoldComplexResultFuture property) (openprotein.fold.FoldResultFuture property) (openprotein.models.foundation.boltzgen.BoltzGenFuture property) (openprotein.models.foundation.rfdiffusion.RFdiffusionFuture property) (openprotein.prompt.Prompt property) (openprotein.svd.SVDEmbeddingsResultFuture property) (openprotein.umap.UMAPEmbeddingsResultFuture property) Prompt (class in openprotein.prompt) prompt (openprotein.OpenProtein property) prompt_id (openprotein.prompt.PromptJob property) PromptAPI (class in openprotein.prompt) PromptJob (class in openprotein.prompt) PromptMetadata (class in openprotein.prompt) prot_seq (openprotein.embeddings.EmbeddingsAPI attribute) protein (openprotein.models.foundation.boltzgen_schema.Entity attribute) ProteinEntity (class in openprotein.models.foundation.boltzgen_schema) proteins (openprotein.fold.FoldComplexResultFuture property) Q Query (class in openprotein.prompt) QueryMetadata (class in openprotein.prompt) R reduction (openprotein.predictor.PredictorModel property) (openprotein.svd.SVDModel property) (openprotein.umap.UMAPModel property) refresh() (openprotein.embeddings.EmbeddingsGenerateFuture method) (openprotein.embeddings.EmbeddingsResultFuture method) (openprotein.embeddings.EmbeddingsScoreFuture method) (openprotein.fold.FoldComplexResultFuture method) (openprotein.fold.FoldResultFuture method) (openprotein.models.foundation.boltzgen.BoltzGenFuture method) (openprotein.models.foundation.rfdiffusion.RFdiffusionFuture method) (openprotein.prompt.Prompt method) (openprotein.svd.SVDEmbeddingsResultFuture method) (openprotein.umap.UMAPEmbeddingsResultFuture method) rf3 (openprotein.fold.FoldAPI attribute) RFdiffusionFuture (class in openprotein.models.foundation.rfdiffusion) RFdiffusionModel (class in openprotein.models.foundation.rfdiffusion) rnas (openprotein.fold.FoldComplexResultFuture property) rosettafold_3 (openprotein.fold.FoldAPI attribute) rotaprot_large_uniref50w (openprotein.embeddings.EmbeddingsAPI attribute) rotaprot_large_uniref90_ft (openprotein.embeddings.EmbeddingsAPI attribute) S sample_prompt() (openprotein.align.MSAFuture method) score (openprotein.fold.FoldComplexResultFuture property) score() (openprotein.embeddings.PoET2Model method) (openprotein.embeddings.PoETModel method) secondary_structure (openprotein.models.foundation.boltzgen_schema.FileEntity attribute) (openprotein.models.foundation.boltzgen_schema.ProteinEntity attribute) sequence (openprotein.models.foundation.boltzgen_schema.ProteinEntity attribute) sequence_length (openprotein.predictor.PredictorModel property) (openprotein.svd.SVDModel property) (openprotein.umap.UMAPModel property) sequences (openprotein.fold.FoldResultFuture property) (openprotein.umap.UMAPModel property) single_site() (openprotein.embeddings.PoET2Model method) (openprotein.embeddings.PoETModel method) (openprotein.predictor.PredictorModel method) smiles (openprotein.models.foundation.boltzgen_schema.LigandEntity attribute) start_date (openprotein.embeddings.EmbeddingsGenerateFuture property) (openprotein.embeddings.EmbeddingsResultFuture property) (openprotein.embeddings.EmbeddingsScoreFuture property) (openprotein.fold.FoldComplexResultFuture property) (openprotein.fold.FoldResultFuture property) (openprotein.models.foundation.boltzgen.BoltzGenFuture property) (openprotein.models.foundation.rfdiffusion.RFdiffusionFuture property) (openprotein.prompt.Prompt property) (openprotein.svd.SVDEmbeddingsResultFuture property) (openprotein.umap.UMAPEmbeddingsResultFuture property) status (openprotein.embeddings.EmbeddingsGenerateFuture property) (openprotein.embeddings.EmbeddingsResultFuture property) (openprotein.embeddings.EmbeddingsScoreFuture property) (openprotein.fold.FoldComplexResultFuture property) (openprotein.fold.FoldResultFuture property) (openprotein.models.foundation.boltzgen.BoltzGenFuture property) (openprotein.models.foundation.rfdiffusion.RFdiffusionFuture property) (openprotein.prompt.Prompt property) (openprotein.svd.SVDEmbeddingsResultFuture property) (openprotein.umap.UMAPEmbeddingsResultFuture property) stream() (openprotein.design.DesignFuture method) (openprotein.embeddings.EmbeddingsGenerateFuture method) (openprotein.embeddings.EmbeddingsResultFuture method) (openprotein.embeddings.EmbeddingsScoreFuture method) (openprotein.fold.FoldResultFuture method) (openprotein.svd.SVDEmbeddingsResultFuture method) (openprotein.umap.UMAPEmbeddingsResultFuture method) structure_groups (openprotein.models.foundation.boltzgen_schema.FileEntity attribute) svd (openprotein.OpenProtein property) SVDAPI (class in openprotein.svd) SVDEmbeddingsJob (class in openprotein.svd) SVDEmbeddingsResultFuture (class in openprotein.svd) SVDFitJob (class in openprotein.svd) SVDMetadata (class in openprotein.svd) SVDModel (class in openprotein.svd), [1] T total_len (openprotein.models.foundation.boltzgen_schema.Constraint attribute) TotalLengthConstraint (class in openprotein.models.foundation.boltzgen_schema) training_assay (openprotein.predictor.PredictorModel property) training_properties (openprotein.predictor.PredictorModel property) U umap (openprotein.OpenProtein property) UMAPAPI (class in openprotein.umap) UMAPEmbeddingsJob (class in openprotein.umap) UMAPEmbeddingsResultFuture (class in openprotein.umap) UMAPFitJob (class in openprotein.umap) UMAPMetadata (class in openprotein.umap) UMAPModel (class in openprotein.umap), [1] update() (openprotein.data.AssayDataset method) upload_msa() (openprotein.align.AlignAPI method) upload_prompt() (openprotein.align.AlignAPI method) W wait() (openprotein.embeddings.EmbeddingsGenerateFuture method) (openprotein.embeddings.EmbeddingsResultFuture method) (openprotein.embeddings.EmbeddingsScoreFuture method) (openprotein.fold.FoldComplexResultFuture method) (openprotein.fold.FoldResultFuture method) (openprotein.jobs.Future method) (openprotein.jobs.JobsAPI method) (openprotein.models.foundation.boltzgen.BoltzGenFuture method) (openprotein.models.foundation.rfdiffusion.RFdiffusionFuture method) (openprotein.prompt.Prompt method) (openprotein.svd.SVDEmbeddingsResultFuture method) (openprotein.umap.UMAPEmbeddingsResultFuture method) wait_until_done() (openprotein.embeddings.EmbeddingsGenerateFuture method) (openprotein.embeddings.EmbeddingsResultFuture method) (openprotein.embeddings.EmbeddingsScoreFuture method) (openprotein.fold.FoldComplexResultFuture method) (openprotein.fold.FoldResultFuture method) (openprotein.jobs.Future method) (openprotein.models.foundation.boltzgen.BoltzGenFuture method) (openprotein.models.foundation.rfdiffusion.RFdiffusionFuture method) (openprotein.prompt.Prompt method) (openprotein.svd.SVDEmbeddingsResultFuture method) (openprotein.umap.UMAPEmbeddingsResultFuture method)
